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Mickaël Canouil
Curriculum Vitæ
I’m currently working for the Institut Pasteur de Lille at the UMR 8199 - “Integrated Genomics and Metabolic Diseases Modelling” as the head of the biostatistic team.
Education
Doctor of Philosophy (Ph.D.) in BioStatistics
University of Lille
Lille, France
Oct. 2014 - Sep. 2017
Thesis: Development and Application of Statistical Methods for Multi-Omics Studies in Type 2 Diabetes: Beyond the Genome-Wide Association Studies Era
Master’s Degree in Biostatistics, Bioinformatics and Genomics (Specialised in Biostatistics)
University Claude Bernard Lyon 1
Lyon, France
Sep. 2009 - Jul. 2011
Internships:
- Mathematical Modelling of Nosocomial Rotavirus Infections in Pediatric Ward
- Development of a Non-Parametric (on Time) Clustering Algorithm for Longitudinal Data
Bachelor’s Degree in Biology (Specialised in Biostatistics)
University Claude Bernard Lyon 1
Lyon, France
Sep. 2006 - Jul. 2009
Professional & Research Experience
Head of the Biostatistic Team
Laboratory of Integrated Genomics
and Metabolic Diseases Modeling
EGID - UMR 8199
(European Genomics Institute for Diabetes)
Lille, France
Jan. 2016 - Present
Activities: Genome-wide association studies, experimental design, -omics data analysis, methodological developments, team management
Biostatistician
Laboratory of Integrated Genomics
and Metabolic Diseases Modeling
EGID - UMR 8199
(European Genomics Institute for Diabetes)
Lille, France
Sep. 2012 - Dec. 2015
Activities: Genome-wide association studies, experimental design, -omics data analysis, methodological developments
Biostatistician
French Institute of Science and Technology for
Transport, Development and Networks
(IFSTTAR)
UMRESTTE - UMR T9405
Bron, France
Nov. 2011 - Dec. 2011
Activities: Analysis of a mobility and accident study in secondary-school pupils
Biostatistician (Internship)
Hospices Civiles de Lyon
Biostatistics Unit
UMR CNRS 5558
Lyon, France
Jan. 2011 - Jun. 2011
Activities: Development of a Non-Parametric (on Time) Clustering Algorithm for Longitudinal Data
Biostatistician (Internship)
Biometry and Evolutionary Biology laboratory
(LBBE)
UMR CNRS 5558
Lyon, France
Mar. 2010 - Jun. 2010
Activities: Mathematical Modelling of Nosocomial Rotavirus Infections in Pediatric Ward
Teaching Experience
R and Databases
Two-days training (in French)
“Unités Régionales de Formation
à l’Information Scientifique et Technique”
(URFIST)
Bordeaux, France
2018
Julia for Intensive Scientific Computing
Half-day workshop (in French)
“Journées nationales du
DEVeloppement logiciel”
(JDEV)
Bordeaux, France
2015
R Packages
CARoT: Centralised and Automated RepOrting Tools
Mickaël Canouil, Mathilde Boissel and Lijiao Ning
N/A
Apr. 2019
NACHO: NanoString Quality Control Dashboard
Mickaël Canouil, Gerard Bouland and Roderick Slieker
N/A
Apr. 2019
clere: Simultaneous Variables Clustering and Regression
Loïc Yengo, Julien Jacques, Christophe Biernacki and Mickaël Canouil
N/A
Feb. 2014
snpEnrichment: SNPs Enrichment Analysis
Mickaël Canouil and Loïc Yengo
N/A
Apr. 2013
Awards
Funding Allocation SFD-Lilly
"Société Francophone du Diabète
(SFD)
Bordeaux, France
2015
Project: Detection of new genomic variants associated with fasting blood glucose and incidence of type 2 diabetes simultaneously
Oral communications
Jointly Modelling SNPs with Survival & Longitudinal Trait
Thematic Day “Statistic & Genomic”
of the Réseau Interdisciplinaire
autour de la Statistique
(RIS)
Paris, France
2018
Longitudinal Genetic Modelling: Revisiting Associations of SNPs Associated with Blood Fasting Glucose in Normoglycemic Individuals
Statistical Methods for Post Genomic Data
(SMPGD)
Lille, France
2016
Poster communications
“Variants Génétiques Associés à la Trajectoire de la Glycémie à Jeun et à l’Incidence du Diabète de Type 2: Une Approche par Modèle Joint” (CA-075)
Annual Congress
of
“Société Francophone du Diabète”
(SFD)
Lille, France
2017
Single Nucleotide Polymorphisms Associated With Fasting Blood Glucose Trajectory And Type 2 Diabetes Incidence: A Joint Modelling Approach
4th Symposium
European Genomic Institute for Diabetes
(EGID)
Lille, France
2016
Single Nucleotide Polymorphisms Associated With Fasting Blood Glucose Trajectory And Type 2 Diabetes Incidence: A Joint Modelling Approach
International Genetic Epidemiology Society
(IGES)
Toronto, Canada
2016
Application of Joint Models in Genetic Association Studies
International Genetic Epidemiology Society
(IGES)
Baltimore, United-States
2015
Publications (18)
Multi-ancestry genome-wide gene–smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids
Amy R. Bentley, Yun J. Sung, Michael R. Brown, Thomas W. Winkler, Aldi T. Kraja, Ioanna Ntalla, Karen Schwander, Daniel I. Chasman, Elise Lim, …, Mickaël Canouil97 et al.
N/A
Apr. 2019
A multi-ancestry genome-wide study incorporating gene-smoking interactions identifies multiple new loci for pulse pressure and mean arterial pressure
Yun Ju Sung, Lisa de las Fuentes, Thomas W. Winkler, Daniel I. Chasman, Amy R. Bentley, Aldi T. Kraja, Ioanna Ntalla, Helen R. Warren, Xiuqing Guo, …, Mickaël Canouil95 et al.
N/A
Apr. 2019
Laser capture microdissection of human pancreatic islets reveals novel eQTLs associated with type 2 diabetes
Amna Khamis, Mickaël Canouil†, Afshan Siddiq, Hutokshi Crouch, Mario Falchi, Manon von Bulow, Florian Ehehalt, Lorella Marselli, Marius Distler, Daniela Richter et al.
N/A
Mar. 2019
† As first or co-first author.
Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity
Lifelines Cohort Study Lifelines Cohort Study, Tuomas O. Kilpeläinen, Amy R. Bentley, Raymond Noordam, Yun Ju Sung, Karen Schwander, Thomas W. Winkler, Hermina Jakupović, Daniel I. Chasman, …, Mickaël Canouil75 et al.
N/A
Jan. 2019
Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions
Paul S. de Vries, Michael R. Brown, Amy R. Bentley, Yun J. Sung, Thomas W. Winkler, Ioanna Ntalla, Karen Schwander, Aldi T. Kraja, Xiuqing Guo, …, Mickaël Canouil81 et al.
N/A
Jan. 2019
Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps
Anubha Mahajan, Daniel Taliun, Matthias Thurner, Neil R. Robertson, Jason M. Torres, N. William Rayner, Anthony J. Payne, Valgerdur Steinthorsdottir, Robert A. Scott, …, Mickaël Canouil35 et al.
N/A
Oct. 2018
Type 2 diabetes–associated variants of the MT2 melatonin receptor affect distinct modes of signaling
Angeliki Karamitri, Bianca Plouffe, Amélie Bonnefond, Min Chen, Jonathan Gallion, Jean-Luc Guillaume, Alan Hegron, Mathilde Boissel, Mickaël Canouil, Claudia Langenberg et al.
N/A
Aug. 2018
Jointly Modelling Single Nucleotide Polymorphisms With Longitudinal and Time-to-Event Trait: An Application to Type 2 Diabetes and Fasting Plasma Glucose
Mickaël Canouil†, Beverley Balkau, Ronan Roussel, Philippe Froguel and Ghislain Rocheleau
N/A
Jun. 2018
† As first or co-first author.
Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries
Mary F. Feitosa, Aldi T. Kraja, Daniel I. Chasman, Yun J. Sung, Thomas W. Winkler, Ioanna Ntalla, Xiuqing Guo, Nora Franceschini, Ching-Yu Cheng, …, Mickaël Canouil87 et al.
N/A
Jun. 2018
Increased Hepatic PDGF-AA Signaling Mediates Liver Insulin Resistance in Obesity Associated Type 2 Diabetes
Amar Abderrahmani, Loïc Yengo, Robert Caiazzo, Mickaël Canouil†, Stéphane Cauchi, Violeta Raverdy, Valérie Plaisance, Valérie Pawlowski, Stéphane Lobbens, Julie Maillet et al.
N/A
May 2018
† As first or co-first author.
Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes
Anubha Mahajan, Jennifer Wessel, Sara M. Willems, Wei Zhao, Neil R. Robertson, Audrey Y. Chu, Wei Gan, Hidetoshi Kitajima, Daniel Taliun, …, Mickaël Canouil68 et al.
N/A
Apr. 2018
A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure
Yun J. Sung, Thomas W. Winkler, Lisa de Las Fuentes, Amy R. Bentley, Michael R. Brown, Aldi T. Kraja, Karen Schwander, Ioanna Ntalla, Xiuqing Guo, …, Mickaël Canouil94 et al.
N/A
Mar. 2018
Expression and functional assessment of candidate type 2 diabetes susceptibility genes identify four new genes contributing to human insulin secretion
Fatou K. Ndiaye, Ana Ortalli, Mickaël Canouil†, Marlène Huyvaert, Clara Salazar-Cardozo, Cécile Lecoeur, Marie Verbanck, Valérie Pawlowski, Raphaël Boutry, Emmanuelle Durand et al.
N/A
Jun. 2017
† As first or co-first author.
Low-dose exposure to bisphenols A, F and S of human primary adipocyte impacts coding and non-coding RNA profiles
Marie Verbanck, Mickaël Canouil†, Audrey Leloire, Véronique Dhennin, Xavier Coumoul, Loïc Yengo, Philippe Froguel and Odile Poulain-Godefroy
N/A
Jun. 2017
† As first or co-first author.
Decreased STARD10 Expression Is Associated with Defective Insulin Secretion in Humans and Mice
Gaelle R. Carrat, Ming Hu, Marie-Sophie Nguyen-Tu, Pauline Chabosseau, Kyle J. Gaulton, Martijn van de Bunt, Afshan Siddiq, Mario Falchi, Matthias Thurner, Mickaël Canouil et al.
N/A
Feb. 2017
Relationship between salivary/pancreatic amylase and body mass index: a systems biology approach
Amélie Bonnefond, Loïc Yengo, Aurélie Dechaume, Mickaël Canouil, Maxime Castelain, Estelle Roger, Frédéric Allegaert, Robert Caiazzo, Violeta Raverdy, Marie Pigeyre et al.
N/A
Feb. 2017
Hepatic DPP4 DNA Methylation Associates With Fatty Liver
Christian Baumeier, Sophie Saussenthaler, Anne Kammel, Markus Jähnert, Luisa Schlüter, Deike Hesse, Mickaël Canouil, Stephane Lobbens, Robert Caiazzo, Violeta Raverdy et al.
N/A
Jan. 2017
Variable Clustering in High-Dimensional Linear Regression: The R Package clere
Loïc Yengo, Julien Jacques, Christophe Biernacki and Mickaël Canouil
N/A
Apr. 2016